Monday, May 23, 2011

Installing RVM (Ruby Version Manager) on Ubuntu 10.10

Wayne E. Seguin's RVM is the new hotness, so I decided to install it. Here I describe how I did it on my Dell laptop running Ubuntu 10.10. I assume you already have Ruby and git installed. I'll be following the installation instructions on the RVM page for a single-user install, not a multi-user install.

First, make sure you have git installed, and then find out what shell you're using:
$ ps -p$$ -ocmd=
bash -v
This tells me I'm using the Bash shell, which I can confirm by asking Bash explicitly what version it is:
$ bash --version
GNU bash, version 4.1.5(1)-release (i686-pc-linux-gnu)

The RVM installation instructions show three steps to follow:
  1. Download and run the RVM installation script
  2. Load RVM into your shell sessions as a function
  3. Reload shell configuration & test
We'll go through each of these in turn.

Step one: Download and run the RVM installation script

Run the installation script by copying exactly the command specified in the instructions:
$ bash < <(curl -s https://rvm.beginrescueend.com/install/rvm)
curl -s https://rvm.beginrescueend.com/install/rvm
Successfully checked out branch ''
remote: Counting objects: 430, done.
remote: Compressing objects: 100% (361/361), done.
remote: Total 384 (delta 263), reused 0 (delta 0)
Receiving objects: 100% (384/384), 49.60 KiB, done.
Resolving deltas: 100% (263/263), completed with 36 local objects.
From git://github.com/wayneeseguin/rvm
   07698bc..8bbab99  master     -> origin/master
From git://github.com/wayneeseguin/rvm
 * [new tag]         1.6.10     -> 1.6.10
 * [new tag]         1.6.11     -> 1.6.11
 * [new tag]         1.6.12     -> 1.6.12
 * [new tag]         1.6.13     -> 1.6.13
 * [new tag]         1.6.14     -> 1.6.14
 * [new tag]         1.6.6      -> 1.6.6
 * [new tag]         1.6.7      -> 1.6.7
 * [new tag]         1.6.8      -> 1.6.8
 * [new tag]         1.6.9      -> 1.6.9
First, rewinding head to replay your work on top of it...
Fast-forwarded master to 8bbab996123063aaeb5f7025f34aa742fc107b57.
Successfully pulled (rebased) from origin 

  RVM:  Shell scripts enabling management of multiple ruby environments.
  RTFM: https://rvm.beginrescueend.com/
  HELP: http://webchat.freenode.net/?channels=rvm (#rvm on irc.freenode.net)
  
Upgrading the RVM installation in /home/andy/.rvm/~/.rvm ~/.rvm/src/rvm
~/.rvm/src/rvm

    Correct permissions for base binaries in /home/andy/bin...
    Copying manpages into place.


Upgrade Notes

  * rvm_trust_rvmrcs has been changed to rvm_trust_rvmrcs_flag for consistency

  * Ruby package dependency list for your OS is given by:
    rvm notes

  * If you encounter any issues with a ruby 'X' your best bet is to:
    rvm remove X ; rvm install X

  * If you wish to have the 'pretty colors' again, set in ~/.rvmrc:
    export rvm_pretty_print_flag=1

  * If you see the following error message: Unknown alias name: 'default'
    re-set your default ruby, this is due to a change in how default works.


WARNING: You have RUBYOPT set in your current environment.
This may cause rubies to not work as you expect them to as it is not supported
by all of them If errors show up, please try un-setting RUBYOPT first.


Upgrade of RVM in /home/andy/.rvm/ is complete.


Andy Sturges,

Thank you very much for using RVM! I sincerely hope that RVM helps to
make your work both easier and more enjoyable.

If you have any questions, issues and/or ideas for improvement please
join#rvm on irc.freenode.net and let me know, note you must register
(http://bit.ly/5mGjlm) and identify (/msg nickserv  ) to
talk, this prevents spambots from ruining our day.

My irc nickname is 'wayneeseguin' and I hang out in #rvm typically

  ~09:00-17:00EDT and again from ~21:00EDT-~23:00EDT

If I do not respond right away, please hang around after asking your
question, I will respond as soon as I am back.  It is best to talk in
#rvm itself as then other users can help out should I be offline.

Be sure to get head often as rvm development happens fast,
you can do this by running 'rvm get head' followed by 'rvm reload'
or opening a new shell

  w⦿‿⦿t

    ~ Wayne

It appears that everything worked, but we got one big warning:
WARNING: You have RUBYOPT set in your current environment.
This may cause rubies to not work as you expect them to as it is not supported
by all of them If errors show up, please try unsetting RUBYOPT first.
What is RUBYOPT, what is my current environment, and how do I unset it? First, try this:

$ echo $RUBYOPT
rubygems

RUBYOPT is an environment variable that I set a long time ago because I got tired of requiring rubygems in all of my ruby scripts. But I guess it's time to remove it. RubyGems is a gem management system, but it's not the only one; a particular library might prefer to use another one, so by setting it as an environment variable, I force all libraries to use my choice, and those libraries might have issues with that. I had set this environment variable by adding the following line to the file ~./bashrc:

export RUBYOPT="rubygems"
To unset it, I'll just delete or comment out that line, and restart the shell. Now if I try echoing the value of that variable again, I get nothing:

$ echo $RUBYOPT

With that taken care of, I'll run the RVM installation script again, and this time I get a much shorter output with no warnings:
$ bash < <(curl -s https://rvm.beginrescueend.com/install/rvm)
Successfully checked out branch ''
Current branch master is up to date.
Successfully pulled (rebased) from origin 

  RVM:  Shell scripts enabling management of multiple ruby environments.
  RTFM: https://rvm.beginrescueend.com/
  HELP: http://webchat.freenode.net/?channels=rvm (#rvm on irc.freenode.net)
  
Upgrading the RVM installation in /home/andy/.rvm/~/.rvm ~/.rvm/src/rvm
~/.rvm/src/rvm

    Correct permissions for base binaries in /home/andy/bin...
    Copying manpages into place.


Upgrade Notes

  * rvm_trust_rvmrcs has been changed to rvm_trust_rvmrcs_flag for consistency

  * Ruby package dependency list for your OS is given by:
    rvm notes

  * If you encounter any issues with a ruby 'X' your best bet is to:
    rvm remove X ; rvm install X

  * If you wish to have the 'pretty colors' again, set in ~/.rvmrc:
    export rvm_pretty_print_flag=1

  * If you see the following error message: Unknown alias name: 'default'
    re-set your default ruby, this is due to a change in how default works.

Upgrade of RVM in /home/andy/.rvm/ is complete.


Andy Sturges,

Thank you very much for using RVM! I sincerely hope that RVM helps to
make your work both easier and more enjoyable.

If you have any questions, issues and/or ideas for improvement please
join#rvm on irc.freenode.net and let me know, note you must register
(http://bit.ly/5mGjlm) and identify (/msg nickserv  ) to
talk, this prevents spambots from ruining our day.

My irc nickname is 'wayneeseguin' and I hang out in #rvm typically

  ~09:00-17:00EDT and again from ~21:00EDT-~23:00EDT

If I do not respond right away, please hang around after asking your
question, I will respond as soon as I am back.  It is best to talk in
#rvm itself as then other users can help out should I be offline.

Be sure to get head often as rvm development happens fast,
you can do this by running 'rvm get head' followed by 'rvm reload'
or opening a new shell

  w⦿‿⦿t

    ~ Wayne

That's it for step one. Now on to step 2.

Step 2: Load RVM into your shell sessions as a function

The shell session (remember our shell is called "bash," which is the default shipped with Ubuntu) can be changed by modifying the file ~/.bash_profile, which is loaded each time a shell is started. We could edit it with the command:
$ vim ~/.bash_profile
but the RVM installation instructions give us a one-line terminal command that will append the correct line to the correct file, so just do it their way:
$ echo '[[ -s "$HOME/.rvm/scripts/rvm" ]] && . "$HOME/.rvm/scripts/rvm" # Load RVM function' >> ~/.bash_profile
This adds the line "[[ -s "$HOME/.rvm/scripts/rvm" ]]" to the file ~/.bash_profile. That's it for step two.

Step 3. Reload shell configuration & test

As in the instructions, reload your bash profile:
$ source .bash_profile
Then type the following command, after which you hope to see the output "rvm is a function":
$ type rvm | head -1
rvm is a function
This worked for me once, but after I closed and re-opened the terminal, I got the following output:
$ type rvm | head -1
rvm is /home/andy/bin/rvm
The problem, I believe, lies in the difference between .bash_profile and .bashrc: the first runs only when you log in, and the second runs every time you open a terminal (shell) window. If we add the line in question to the file .bashrc, I get the desired output every time I run the type command. We can add line to the .bashrc file by slightly modifying and then re-running the command, replacing ".bash_profile" with ".bashrc":
$ echo '[[ -s "$HOME/.rvm/scripts/rvm" ]] && . "$HOME/.rvm/scripts/rvm" # Load RVM function' >> ~/.bashrc
Now if I run the command type rvm | head -1, I get the correct output each time. Not sure if this is the proper "fix", but there it is. [Edit: Wayne (RVM author) points out that some developers place non-interactive environment setup in .bashrc and then source it from .bash_profile.]

Now run the command rvm notes to see if RVM has any dependencies:
$ rvm notes


Notes for Linux ( DISTRIB_ID=Ubuntu
DISTRIB_RELEASE=10.10
DISTRIB_CODENAME=maverick
DISTRIB_DESCRIPTION="Ubuntu 10.10" )

NOTE: 'ruby' represents Matz's Ruby Interpreter (MRI) (1.8.X, 1.9.X)
             This is the *original* / standard Ruby Language Interpreter
      'ree'  represents Ruby Enterprise Edition
      'rbx'  represents Rubinius

bash >= 3.2 is required
curl is required
git is required (>= 1.7 recommended)
patch is required (for ree and some ruby-head's).

If you wish to install rbx and/or Ruby 1.9 head (MRI) (eg. 1.9.2-head),
then you must install and use rvm 1.8.7 first.

If you wish to have the 'pretty colors' again,
  set 'export rvm_pretty_print_flag=1' in ~/.rvmrc.

dependencies:
# For RVM
  rvm: bash curl git

# For Ruby (MRI & ree)  you should install the following OS dependencies:
  ruby: /usr/bin/apt-get install build-essential bison openssl libreadline6 libreadline6-dev curl git-core zlib1g zlib1g-dev libssl-dev libyaml-dev libsqlite3-0 libsqlite3-dev sqlite3 libxml2-dev libxslt-dev autoconf libc6-dev ncurses-dev

# For JRuby (if you wish to use it) you will need:
  jruby: /usr/bin/apt-get install curl g++ openjdk-6-jre-headless
  jruby-head: /usr/bin/apt-get install ant openjdk-6-jdk

# In addition to ruby: dependencies,
  ruby-head: subversion

# For IronRuby (if you wish to use it) you will need:
  ironruby: /usr/bin/apt-get install curl mono-2.0-devel
As you can see, I'm running Ubuntu 10.10, and it lists the following dependencies:
  • build-essential
  • bison
  • openssl
  • libreadline6
  • libreadline6-dev
  • curl
  • git-core
  • zlib1g
  • zlib1g-dev
  • libssl-dev
  • libyaml-dev
  • libsqlite3-0
  • libsqlite3-dev
  • sqlite3
  • libxml2-dev
  • libxslt-dev
  • autoconf
  • libc6-dev
  • ncurses-dev
That's a lot, but it gives us the full command, and if a package is already installed, then apt-get will just skip it, so we can copy the whole command and run it, prepending "sudo" and removing the "/usr/bin/" part:
$ sudo apt-get install build-essential bison openssl libreadline6 libreadline6-dev curl git-core zlib1g zlib1g-dev libssl-dev libyaml-dev libsqlite3-0 libsqlite3-dev sqlite3 libxml2-dev libxslt-dev autoconf libc6-dev ncurses-dev
Reading package lists... Done
Building dependency tree       
Reading state information... Done
Note, selecting 'libxslt1-dev' instead of 'libxslt-dev'
Note, selecting 'libncurses5-dev' instead of 'ncurses-dev'
build-essential is already the newest version.
build-essential set to manually installed.
curl is already the newest version.
libncurses5-dev is already the newest version.
libncurses5-dev set to manually installed.
libreadline6 is already the newest version.
libreadline6-dev is already the newest version.
libreadline6-dev set to manually installed.
libxslt1-dev is already the newest version.
zlib1g is already the newest version.
zlib1g-dev is already the newest version.
zlib1g-dev set to manually installed.
git-core is already the newest version.
libc6-dev is already the newest version.
libsqlite3-0 is already the newest version.
libsqlite3-dev is already the newest version.
libxml2-dev is already the newest version.
libxml2-dev set to manually installed.
openssl is already the newest version.
sqlite3 is already the newest version.
The following extra packages will be installed:
  automake autotools-dev libyaml-0-2 m4
Suggested packages:
  autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool gettext bison-doc
The following NEW packages will be installed:
  autoconf automake autotools-dev bison libssl-dev libyaml-0-2 libyaml-dev m4
0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded.
Need to get 4,122kB of archives.
After this operation, 12.9MB of additional disk space will be used.
Do you want to continue [Y/n]? y
Get:1 http://us.archive.ubuntu.com/ubuntu/ maverick/main m4 i386 1.4.14-3 [276kB]
Get:2 http://us.archive.ubuntu.com/ubuntu/ maverick/main autoconf all 2.67-2ubuntu1 [569kB]
Get:3 http://us.archive.ubuntu.com/ubuntu/ maverick/main autotools-dev all 20100122.1 [70.7kB]
Get:4 http://us.archive.ubuntu.com/ubuntu/ maverick/main automake all 1:1.11.1-1 [608kB]
Get:5 http://us.archive.ubuntu.com/ubuntu/ maverick/main bison i386 1:2.4.1.dfsg-3 [468kB]
Get:6 http://us.archive.ubuntu.com/ubuntu/ maverick-updates/main libssl-dev i386 0.9.8o-1ubuntu4.4 [2,013kB]
Get:7 http://us.archive.ubuntu.com/ubuntu/ maverick/main libyaml-0-2 i386 0.1.3-1 [53.8kB]
Get:8 http://us.archive.ubuntu.com/ubuntu/ maverick/main libyaml-dev i386 0.1.3-1 [63.3kB]
Fetched 4,122kB in 3s (1,227kB/s)   
Selecting previously deselected package m4.
(Reading database ... 169680 files and directories currently installed.)
Unpacking m4 (from .../archives/m4_1.4.14-3_i386.deb) ...
Selecting previously deselected package autoconf.
Unpacking autoconf (from .../autoconf_2.67-2ubuntu1_all.deb) ...
Selecting previously deselected package autotools-dev.
Unpacking autotools-dev (from .../autotools-dev_20100122.1_all.deb) ...
Selecting previously deselected package automake.
Unpacking automake (from .../automake_1%3a1.11.1-1_all.deb) ...
Selecting previously deselected package bison.
Unpacking bison (from .../bison_1%3a2.4.1.dfsg-3_i386.deb) ...
Selecting previously deselected package libssl-dev.
Unpacking libssl-dev (from .../libssl-dev_0.9.8o-1ubuntu4.4_i386.deb) ...
Selecting previously deselected package libyaml-0-2.
Unpacking libyaml-0-2 (from .../libyaml-0-2_0.1.3-1_i386.deb) ...
Selecting previously deselected package libyaml-dev.
Unpacking libyaml-dev (from .../libyaml-dev_0.1.3-1_i386.deb) ...
Processing triggers for install-info ...
Processing triggers for man-db ...
Processing triggers for doc-base ...
Processing 1 added doc-base file(s)...
Registering documents with scrollkeeper...
Setting up m4 (1.4.14-3) ...
Setting up autoconf (2.67-2ubuntu1) ...
Setting up autotools-dev (20100122.1) ...
Setting up automake (1:1.11.1-1) ...
update-alternatives: using /usr/bin/automake-1.11 to provide /usr/bin/automake (automake) in auto mode.
Setting up bison (1:2.4.1.dfsg-3) ...
update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode.
Setting up libssl-dev (0.9.8o-1ubuntu4.4) ...
Setting up libyaml-0-2 (0.1.3-1) ...
Setting up libyaml-dev (0.1.3-1) ...
Processing triggers for libc-bin ...
ldconfig deferred processing now taking place
As you can see, most of the packages were already installed, but it did find and install some new ones:
  • autoconf
  • automake
  • autotools-dev
  • bison
  • libssl-dev
  • libyaml-0-2
  • libyaml-dev
  • m4
I have no idea what those are, but who cares. They're free. [Edit: Wayne tells me they're for installing head versions of Ruby 1.9]

That's it for setting up RVM. Now we can start using it.

Install a new version of Ruby using RVM

I already had Ruby 1.8.7 installed on my laptop. Now I want to use RVM to install 1.9.2:
$ rvm install 1.9.2
Installing Ruby from source to: /home/andy/.rvm/rubies/ruby-1.9.2-p180, this may take a while depending on your cpu(s)...

ruby-1.9.2-p180 - #fetching 
ruby-1.9.2-p180 - #downloading ruby-1.9.2-p180, this may take a while depending on your connection...
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 8609k  100 8609k    0     0   891k      0  0:00:09  0:00:09 --:--:-- 1642k
100 8609k  100 8609k    0     0   871k      0  0:00:09  0:00:09 --:--:--  871kruby-1.9.2-p180 - #extracting ruby-1.9.2-p180 to /home/andy/.rvm/src/ruby-1.9.2-p180
ruby-1.9.2-p180 - #extracted to /home/andy/.rvm/src/ruby-1.9.2-p180
ruby-1.9.2-p180 - #configuring 
ruby-1.9.2-p180 - #compiling 
ruby-1.9.2-p180 - #installing 
Removing old Rubygems files...
Installing rubygems dedicated to ruby-1.9.2-p180...
Retrieving rubygems-1.6.2
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100  236k  100  236k    0     0  1629k      0 --:--:-- --:--:-- --:--:-- 1957k
Extracting rubygems-1.6.2 ...
Installing rubygems for /home/andy/.rvm/rubies/ruby-1.9.2-p180/bin/ruby
Installation of rubygems completed successfully.
ruby-1.9.2-p180 - adjusting #shebangs for (gem irb erb ri rdoc testrb rake).
ruby-1.9.2-p180 - #importing default gemsets (/home/andy/.rvm/gemsets/)
Install of ruby-1.9.2-p180 - #complete 
So now I have installed Ruby 1.9.2. Next we have to tell RVM to switch to that version of Ruby:
$ which ruby
/usr/bin/ruby
andy@andy-laptop:~$ ruby -v
ruby 1.8.7 (2010-06-23 patchlevel 299) [i686-linux]
andy@andy-laptop:~$ rvm use 1.9.2
Using /home/andy/.rvm/gems/ruby-1.9.2-p180
andy@andy-laptop:~$ which ruby
/home/andy/.rvm/rubies/ruby-1.9.2-p180/bin/ruby
andy@andy-laptop:~$ ruby -v
ruby 1.9.2p180 (2011-02-18 revision 30909) [i686-linux] 

That's it. From here, head over the RVM page and start reading the RVM documentation.

Conclusion and summary for power users

On Ubuntu 10.10 running Ruby 1.8.7 and git, we installed and configured RVM, then used RVM to download and run Ruby 1.9.2. We can switch between Ruby versions by using the command rvm use. We followed the installation instructions exactly, except we added a line to the file .bashrc, instead of to the file .bash_profile, as was instructed. We also had to unset the RUBYOPT variable to remove an installation warning.

Summary of commands for power uses:

$ bash < <(curl -s https://rvm.beginrescueend.com/install/rvm)
$ echo '[[ -s "$HOME/.rvm/scripts/rvm" ]] && . "$HOME/.rvm/scripts/rvm" # Load RVM function' >> ~/.bashrc
$ source .bashrc
$ type rvm | head -1
rvm is a function
$ rvm notes
# For Ruby (MRI & ree)  you should install the following OS dependencies:
  ruby: /usr/bin/apt-get install build-essential bison openssl libreadline6 libreadline6-dev curl git-core zlib1g zlib1g-dev libssl-dev libyaml-dev libsqlite3-0 libsqlite3-dev sqlite3 libxml2-dev libxslt-dev autoconf libc6-dev ncurses-dev
sudo apt-get install build-essential bison openssl libreadline6 libreadline6-dev curl git-core zlib1g zlib1g-dev libssl-dev libyaml-dev libsqlite3-0 libsqlite3-dev sqlite3 libxml2-dev libxslt-dev autoconf libc6-dev ncurses-dev
$ rvm install 1.9.2
$ rvm use 1.9.2
$ ruby -v
ruby 1.9.2p180 (2011-02-18 revision 30909) [i686-linux]
Special thanks go to Wayne Seguin for RVM, and all who contribute code to it. Throw some money Wayne's way if you find RVM useful.
~fin~

Wednesday, May 4, 2011

Installing NCView 2.0beta4 on Ubuntu 10.10

This post explains how I installed David Pierce's Ncview utility (version 2.0beta4) on Ubuntu 10.10. NB: Power users should scroll to the bottom for a summary of commands.

What is Ncview?

According to its author David Pierce of the Scripps Institute of Oceanography, Ncview is a visual browser for NetCDF files.

What is a NetCDF file?

A NetCDF file is a self-describing, machine-independent array file commonly used by the climate science community to store climate data. If you're interested in Ncview, you probably know about NetCDF files.

Why do we need Ncview?

NetCDF files can have dozens of dimensions, hundreds of variables, and millions of data points. Ncview can help a user get a quick picture of what the file holds, how to read it, and where to find the parts of the data in which he or she is interested.

Installing Ncview on Ubuntu 10.10

This post shows how to install Ncview 2.0 beta4 on Ubuntu (10.10) specifically. For instructions on how to install Ncview generally on Linux, see David Pierce's Ncview site.

Get Ncview source files

First we need to download the Ncview source files. Navigate to ftp://cirrus.ucsd.edu/pub/ncview/ and select the most recent package. As of this writing, the most recent package is ncview-2.0beta4.tar.gz, updated on 3/4/2010. Download this tar.gz file and open it with Ubuntu's Archive Manager.

Next, extract the files to your home directory. From Archive Manager, I just click on the "Extract" button, select my home directory, and click on "Extract." This creates the folder "ncview-2.0beta4" in my home directory.

Browse the readme and the installation instructions

In the newly created folder, take a look at the files README and INSTALL. These are general instructions that provide good background. This installation tutorial borrows heavily from these two files.

Installation overview

In a perfect world, i.e. one where all dependencies were met and all files on your local machine were exactly where the installation scripts expected them to be, the installation would follow three steps, entered from the terminal from within the ncview-2.0beta4 directory:
  1. $ ./configure
  2. $ make
  3. $ make install
As such, this is a good starting point, because it just might work. But on my machine, I get the following errors when I try the first step:
andy@andy-laptop:~$ cd ncview-2.0beta4/
andy@andy-laptop:~/ncview-2.0beta4$ ./configure
checking for nc-config... yes
Netcdf library version: netCDF 4.1.1
Netcdf library has version 4 interface present: yes
Netcdf library was compiled with C compiler: gcc
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for library containing strerror... none required
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking for X... no
------------------------------------------------------------------------------------
Error, the X libraries and development headers must be installed for ncview to work!
------------------------------------------------------------------------------------
More information: You are trying to compile ncview. The machine you are compiling on
probably already has the X windows *runtime* libraries installed, but to *compile*
a program you need more than just the runtime libraries.  You need what are usually
called the 'development headers', named because they are used when developing or
compiling X windows programs.  The best advice I can give you is to use your package
manager to look for a package whose name is something along the lines of x11-devel,
or xorg-x11-proto-devel, or something along those lines that indicates the package
contains the X windows development headers.  Install that package first, then try to
remake ncview.  
Note: If that still fails, even after you've installed the X windows *development*
headers, then you may be on a machine where the automatic configuration system is not
set up quite as it probably should be.  In that case, you might have to specify the
location of the X libraries and X headers manually.  For example, on some machines
the following will work:
   ./configure  --x-libraries=/usr/lib64 --x-includes=/usr/include/X11
                              ^^^^^^^^^^              ^^^^^^^^^^^^^^^^ these are what
you want to set to reflect the location of files such as libX11.so and X.h on your
particular system.

The script output tells us that it performed about a dozen checks which passed, then reached one it failed (the line "checking for X. . . no"). Then we get the error "the X libraries and development headers must be installed for ncview to work!" Lastly, we get a very thorough message from Ncview author David Pierce advising us how to meet the "X" dependency. As he notes, we need the X windows *development* headers.

Install xorg-dev dependencies

We need the X Windows development headers. The brute force way to do this on Ubuntu is to install the package "xorg-dev," which includes many (all?) development header files related to the X11 windows system. Here's how I did it:
andy@andy-laptop:~$ sudo apt-get install xorg-dev
[sudo] password for andy: 
Reading package lists... Done
Building dependency tree       
Reading state information... Done
The following extra packages will be installed:
  libdmx-dev libdmx1 libexpat1-dev libfontconfig1-dev libfontenc-dev libfreetype6-dev libfs-dev libice-dev libpciaccess-dev
  libpixman-1-dev libpthread-stubs0 libpthread-stubs0-dev libsm-dev libx11-dev libxau-dev libxaw7-dev libxcb1-dev libxcomposite-dev
  libxcursor-dev libxdamage-dev libxdmcp-dev libxext-dev libxfixes-dev libxfont-dev libxft-dev libxi-dev libxinerama-dev libxkbfile-dev
  libxmu-dev libxmu-headers libxmuu-dev libxpm-dev libxrandr-dev libxrender-dev libxres-dev libxss-dev libxt-dev libxtst-dev libxv-dev
  libxvmc-dev libxxf86dga-dev libxxf86vm-dev x11proto-bigreqs-dev x11proto-composite-dev x11proto-core-dev x11proto-damage-dev
  x11proto-dmx-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-fonts-dev x11proto-gl-dev x11proto-input-dev x11proto-kb-dev
  x11proto-randr-dev x11proto-record-dev x11proto-render-dev x11proto-resource-dev x11proto-scrnsaver-dev x11proto-video-dev
  x11proto-xcmisc-dev x11proto-xext-dev x11proto-xf86bigfont-dev x11proto-xf86dga-dev x11proto-xf86dri-dev x11proto-xf86vidmode-dev
  x11proto-xinerama-dev xserver-xorg-dev xtrans-dev
The following NEW packages will be installed:
  libdmx-dev libdmx1 libexpat1-dev libfontconfig1-dev libfontenc-dev libfreetype6-dev libfs-dev libice-dev libpciaccess-dev
  libpixman-1-dev libpthread-stubs0 libpthread-stubs0-dev libsm-dev libx11-dev libxau-dev libxaw7-dev libxcb1-dev libxcomposite-dev
  libxcursor-dev libxdamage-dev libxdmcp-dev libxext-dev libxfixes-dev libxfont-dev libxft-dev libxi-dev libxinerama-dev libxkbfile-dev
  libxmu-dev libxmu-headers libxmuu-dev libxpm-dev libxrandr-dev libxrender-dev libxres-dev libxss-dev libxt-dev libxtst-dev libxv-dev
  libxvmc-dev libxxf86dga-dev libxxf86vm-dev x11proto-bigreqs-dev x11proto-composite-dev x11proto-core-dev x11proto-damage-dev
  x11proto-dmx-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-fonts-dev x11proto-gl-dev x11proto-input-dev x11proto-kb-dev
  x11proto-randr-dev x11proto-record-dev x11proto-render-dev x11proto-resource-dev x11proto-scrnsaver-dev x11proto-video-dev
  x11proto-xcmisc-dev x11proto-xext-dev x11proto-xf86bigfont-dev x11proto-xf86dga-dev x11proto-xf86dri-dev x11proto-xf86vidmode-dev
  x11proto-xinerama-dev xorg-dev xserver-xorg-dev xtrans-dev
0 upgraded, 69 newly installed, 0 to remove and 0 not upgraded.
Need to get 8,853kB of archives.
After this operation, 26.6MB of additional disk space will be used.
Do you want to continue [Y/n]? Y
This will download and install 27 megabytes worth of files, which we hope includes whatever it is that Ncview needs. Of course we could have tried to identify which handful of files ncview specifically needs and installed just those, but this is easier and faster.

Try ./configure again

After installing the xorg-dev packages, I run the ./configure command again and get the following (truncated) result:
andy@andy-laptop:~/ncview-2.0beta4$ ./configure
checking for nc-config... yes
Netcdf library version: netCDF 4.1.1
[...]
checking for X... libraries , headers 
checking for gethostbyname... yes
[...]
checking udunits2.h usability... no
checking udunits2.h presence... no
checking for udunits2.h... no
[...]
************************************************************************
Note: udunits2 support is NOT enabled, because I could not find the 
location of the udunits2 include file 'udunits2.h' or library file
'libudunits2.a'.  Ncview uses the udunits2 package to format date strings
with units of the form 'days since 1900-01-01'.  If you do not use
these udunits2-standard date formats, then don't worry about the lack
of udunits2 support.  If you DO use udunits2 format date strings, and
you want the udunits2 support, then you must tell me where to find
the udunits2 package by giving arguments to configure, as follows:
  ./configure -with-udunits2_incdir=include_directory -with-udunits2_libdir=library_directory
************************************************************************
checking /usr/local/include/ppm.h usability... no
checking /usr/local/include/ppm.h presence... no
[...]
************************************************************************
Note: the -frames option is NOT enabled, because I could not find the 
location of the PPM include file 'ppm.h' or library file
'libppm.a'.  Ncview uses the ppm package to dump out the frames viewed,
which is an easy way to make an mpeg video of the data if you want.
If you do not want this feature, then don't worry about the lack
of ppm support.  If you DO want this, then you must tell me where to find
the ppm package by giving arguments to configure, as follows:
  ./configure -with-ppm_incdir=include_directory -with-ppm_libdir=library_directory
************************************************************************
checking for a BSD-compatible install... /usr/bin/install -c
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating config.h
config.status: executing depfiles commands
 
----------- Configure Summary ----------
Compiler:
        CC                = gcc
 
UDUNITS:
        UDUNITS2_LIBS     = 
        UDUNITS2_CPPFLAGS = 
        UDUNITS2_LDFLAGS  = 
 
 
NETCDF:
        VERSION          = netCDF 4.1.1
        COMPILER USED    = gcc
        NETCDF_CPPFLAGS  = -I/usr/include
        NETCDF_LDFLAGS   = -L/usr/lib -lnetcdf
        NETCDF_V4        = yes
 
X:
        X_CFLAGS         = 
        X11_LIBS         = -lX11 
        XAW_LIBS         = -lXaw -lXt 
        X_PRE_LIBS       =  -lSM -lICE
        X_LIBS           = 
        X_EXTRA_LIBS     = 
A few things to note:
  1. This time the line "Checking for X ... " succeeded, so we know that installing xorg-dev worked;
  2. It started to fail again when looking for files called "udunits";
  3. Then it started to fail again when it couldn't find PPM files, which we are told are used for making movies of the data.
I want to be able to make movies of the data, so let's tackle the PPM issue.

Install the PPM dependency

The ./configure script output told us it's missing the files ppm.h, among others. Let's figure out what package that belongs to using the program apt-file. I don't have it installed, so I'll install it and then use it to find packages that include the file ppm.h. The following is my truncated commands and output:
andy@andy-laptop:~$ sudo apt-get install apt-file
[sudo] password for andy: 
Reading package lists... Done
[...]
Need to get 508kB of archives.
After this operation, 1,434kB of additional disk space will be used.
Do you want to continue [Y/n]? y
[...]
The system-wide cache is empty. You may want to run 'apt-file update'
as root to update the cache. You can also run 'apt-file update' as
normal user to use a cache in the user's home directory.
And then update the cache as it recommends (this took about 20 minutes with my Comcast Internet connection):
andy@andy-laptop:~$ sudo apt-file update
Downloading complete file http://us.archive.ubuntu.com/ubuntu/dists/maverick/Contents-i386.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 17.4M  100 17.4M    0     0  16574      0  0:18:23  0:18:23 --:--:-- 16731
[...]
Ignoring source without Contents File:
  http://extras.ubuntu.com/ubuntu/dists/maverick/Contents-i386.gz
Ignoring source without Contents File:
  http://dl.google.com/linux/talkplugin/deb/dists/stable/Contents-i386.gz
Now we want to use this program to find the packages with the file ppm.h:
andy@andy-laptop:~$ apt-file search ppm.h
gamgi-doc: /usr/share/doc/gamgi-doc/doc/formats/introduction/ppm.html
grass-doc: /usr/share/doc/grass-doc/html/r.out.ppm.html
gromacs-dev: /usr/include/gromacs/pppm.h
libnetpbm10-dev: /usr/include/libppm.h
libnetpbm10-dev: /usr/include/ppm.h
libnetpbm9-dev: /usr/include/libppm.h
libnetpbm9-dev: /usr/include/ppm.h
libtachyon-dev: /usr/include/tachyon/ppm.h
libtk-img-doc: /usr/share/doc/libtk-img-doc/html/img-ppm.html
tau-examples: /usr/share/doc/tau-examples/examples/opari/c++/ppm.h
tau-examples: /usr/share/doc/tau-examples/examples/openmp/c++/ppm.h
tau-examples: /usr/share/doc/tau-examples/examples/openmp/c/ppm.h
tbb-examples: /usr/share/doc/tbb-examples/examples/parallel_for/tachyon/src/ppm.h
I'm guessing it's the package libnetpbm that we want, so we'll install it:
andy@andy-laptop:~$ sudo apt-get install libnetpbm10-dev
[sudo] password for andy: 
[...]
Setting up libnetpbm10-dev (2:10.0-12.2) ...
Now we can try ./configure again (still heavily truncated output):
andy@andy-laptop:~$ cd ncview-2.0beta4/
andy@andy-laptop:~/ncview-2.0beta4$ ./configure
checking for nc-config... yes
Netcdf library version: netCDF 4.1.1
[...]
checking udunits2.h usability... no
[...]
checking /usr/local/include/ppm.h usability... no
checking /usr/local/include/ppm.h presence... no
checking for /usr/local/include/ppm.h... no
checking /usr/include/ppm.h usability... yes
checking /usr/include/ppm.h presence... yes
checking for /usr/include/ppm.h... yes
checking for ppm_writeppm in -lppm... no
checking for /usr/local/lib/libppm.so... no
checking for /usr/lib/libppm.so... no
checking for /lib/libppm.so... no
checking for /home/andy/lib/libppm.so... no
checking for ppm_writeppm in -lnetpbm... yes
checking for a BSD-compatible install... /usr/bin/install -c
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
 
----------- Configure Summary ----------
Compiler:
        CC                = gcc
 
UDUNITS:
        UDUNITS2_LIBS     = 
        UDUNITS2_CPPFLAGS = 
        UDUNITS2_LDFLAGS  = 
 
 
NETCDF:
        VERSION          = netCDF 4.1.1
        COMPILER USED    = gcc
        NETCDF_CPPFLAGS  = -I/usr/include
        NETCDF_LDFLAGS   = -L/usr/lib -lnetcdf
        NETCDF_V4        = yes
 
X:
        X_CFLAGS         = 
        X11_LIBS         = -lX11 
        XAW_LIBS         = -lXaw -lXt 
        X_PRE_LIBS       =  -lSM -lICE
        X_LIBS           = 
        X_EXTRA_LIBS     = 
This time it found the PPM files it wanted, and we're left with just one remaining error: the UDunits thing. Let's tackle that now.

Install UDUnits dependency

Let's use apt-file search again to find which packages we should install to get our missing files. From the output above, we see that we need the file "udunits2.h", among others. Let's search for it:
andy@andy-laptop:~$ apt-file search udunits2.h
libudunits2-0: /usr/share/doc/libudunits2-0/udunits2.html
libudunits2-dev: /usr/include/udunits2.h
So there's a package called udunits; let's see if there's a broader collection of packages, using aptitude:
andy@andy-laptop:~$ aptitude search udunits
p   libudunits2-0                                                 - Library for handling of units of physical quantities                    
p   libudunits2-dev                                               - Development files for the libunits physical units package               
p   udunits-bin                                                   - Utility for handling units of physical quantities
Let's install all three of these packages:
andy@andy-laptop:~$ sudo apt-get install libudunits2-0 libudunits2-dev udunits-bin

Try ./configure again

Now that we've met the UDUnits and PPM and X Windows dependencies, let's try configuring again:
andy@andy-laptop:~/ncview-2.0beta4$ ./configure
checking for nc-config... yes
Netcdf library version: netCDF 4.1.1
[...]
checking udunits2.h usability... yes
checking udunits2.h presence... yes
[...]
****************************************************************************
Udunits library version 2 support enabled.   
udunits2 dirs: include: .  library: .  libname: udunits2
****************************************************************************
[...] 
----------- Configure Summary ----------
Compiler:
        CC                = gcc
 
UDUNITS:
        UDUNITS2_LIBS     = -ludunits2
        UDUNITS2_CPPFLAGS = -I.
        UDUNITS2_LDFLAGS  = -L. -ludunits2 -lexpat -L. -ludunits2
 
 
NETCDF:
        VERSION          = netCDF 4.1.1
        COMPILER USED    = gcc
        NETCDF_CPPFLAGS  = -I/usr/include
        NETCDF_LDFLAGS   = -L/usr/lib -lnetcdf
        NETCDF_V4        = yes
 
X:
        X_CFLAGS         = 
        X11_LIBS         = -lX11 
        XAW_LIBS         = -lXaw -lXt 
        X_PRE_LIBS       =  -lSM -lICE
        X_LIBS           = 
        X_EXTRA_LIBS     = 
Success. The configure summary shows that it is aware of Compiler, UDUNITS, NETCDF, and X.

Run the make command

The next step is to run the make command.
andy@andy-laptop:~/ncview-2.0beta4$ make
This runs on my machine with copious warnings, but it appears to complete without any fatal errors. Next run make install:
andy@andy-laptop:~/ncview-2.0beta4$ sudo make install

Test the installation

Try testing the installation by running the program:
andy@andy-laptop:~/ncview-2.0beta4$ ncview
Ncview 2.0beta4 David W. Pierce  3 March 2010
Success. That completes the installation of Ncview. It's now ready to be used to browse NetCDF files.

Summary of commands for power users

  1. Download the Ncview source files: ftp://cirrus.ucsd.edu/pub/ncview/ (select most recent package)
  2. Install X.org development headers:
    andy@andy-laptop:~$ sudo apt-get install xorg-dev
  3. Install LibnetPBM development headers:
    andy@andy-laptop:~$ sudo apt-get install libnetpbm10-dev
  4. Install the UDUnits packages:
    andy@andy-laptop:~$ sudo apt-get install libudunits2-0 libudunits2-dev udunits-bin
    
  5. Run the configure script:
    andy@andy-laptop:~/ncview-2.0beta4$ ./configure
  6. Run make:
    andy@andy-laptop:~/ncview-2.0beta4$ make
    
  7. Run make install:
    andy@andy-laptop:~/ncview-2.0beta4$ sudo make install
    
  8. Test the installation:
    andy@andy-laptop:~/ncview-2.0beta4$ ncview
    Ncview 2.0beta4 David W. Pierce  3 March 2010